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pgfinder - Peptidoglycan analysis

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posted on 2022-06-29, 08:54 authored by Neil ShephardNeil Shephard, Stephane MesnageStephane Mesnage, Ankur Patel, Robert Turner

pgfinder is a Python package that automates the  analysis pipeline of data from Liquid Chromatography Mass Spectrometry comparing deconvoluted masses to a database of theoretical monoisotopic masses. These candidate monomers form the basis of theoretical dimer and trimer masses which are in turn matched against possible candidates after determining possible modifications.


Documentation : https://mesnage-org.github.io/pgfinder/


GitHub : https://github.com/Mesnage-Org/pgfinder

Funding

White Rose Doctoral Training Partnership in Mechanistic Biology and its Strategic Application

Biotechnology and Biological Sciences Research Council

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Analysis of the L,D transpeptidation pathway in Clostridium difficile: contribution to peptidoglycan synthesis and antibiotic resistance

Medical Research Council

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