Innovation and elaboration on the avian tree of life
dataset
posted on 2022-11-09, 23:35 authored by Thomas GuillermeThomas Guillerme, Gavin ThomasGavin Thomas, Natalie CooperNatalie Cooper, Andrew BeckermanAndrew Beckerman, Christopher CooneyChristopher Cooney, Jen Bright, Emma HughesEmma Hughes, Zoe Varley<p>Data to reproduce the analysis in "Innovation and elaboration on the avian tree of life".</p>
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<p>The code to reproduce the analyses can be found on GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks</p>
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<p>This folder contains all the raw and cluster-ran data used for the analysis.</p>
<p>[](https://zenodo.org/badge/latestdoi/337779300)</p>
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<p>This folder contains the specific sub-folders:</p>
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<p>## Raw</p>
<p>Contains the beak data (in `Beak_data`), the trees (in `Tree_data`) and the clades information.</p>
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<p>## Processed</p>
<p>This folder contains the results of the `mcmcmcglmmm` for all birds (`shapespace_allbirds_lvl_superorder_order.MCMCglmm`) and for the passeriformes (`shapespace_passeriformes.MCMCglmm`).</p>
<p>These data can be calculated using the [`02-mcmcmcglmmm_analysis.Rmd`](https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis) but takes 3 CPU years.</p>
Funding
This work was funded by UKRI-NERC Grant NE/T000139/1 and a Royal Society University Research Fellowship (URF R 180006 to GHT).
History
Related Materials
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Ethics
- There is no personal data or any that requires ethical approval
Policy
- The data complies with the institution and funders' policies on access and sharing
Sharing and access restrictions
- The data can be shared openly
Data description
- The file formats are open or commonly used
Methodology, headings and units
- There is a file including methodology, headings and units, such as a readme.txt
