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Innovation and elaboration on the avian tree of life

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Data to reproduce the analysis in "Innovation and elaboration on the avian tree of life".


The code to reproduce the analyses can be found on GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks


This folder contains all the raw and cluster-ran data used for the analysis.

[![DOI](https://zenodo.org/badge/337779300.svg)](https://zenodo.org/badge/latestdoi/337779300)


This folder contains the specific sub-folders:


## Raw

Contains the beak data (in `Beak_data`), the trees (in `Tree_data`) and the clades information.


## Processed

This folder contains the results of the `mcmcmcglmmm` for all birds (`shapespace_allbirds_lvl_superorder_order.MCMCglmm`) and for the passeriformes (`shapespace_passeriformes.MCMCglmm`).

These data can be calculated using the [`02-mcmcmcglmmm_analysis.Rmd`](https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis) but takes 3 CPU years.

Funding

This work was funded by UKRI-NERC Grant NE/T000139/1 and a Royal Society University Research Fellowship (URF R 180006 to GHT).

History

Ethics

  • There is no personal data or any that requires ethical approval

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  • The data complies with the institution and funders' policies on access and sharing

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  • The data can be shared openly

Data description

  • The file formats are open or commonly used

Methodology, headings and units

  • There is a file including methodology, headings and units, such as a readme.txt

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