The University of Sheffield
Browse
DATASET
CARD-RGI Perfect & Strict Hits.xlsx (161.28 kB)
TEXT
README.txt (0.99 kB)
1/0
2 files

PhD Thesis Additional Data: CARD-RGI Perfect & Strict Hits

dataset
posted on 2024-04-16, 15:48 authored by Lucy Urwin, Peter N. Monk
Supplementary data from the PhD thesis, 'The Development of in vitro Corneal Infection Models for Antimicrobial Drug Testing' (Lucy Urwin, 2022, Dept. IICD).

Chapter 4 of the thesis describes characterisation of clinical isolates, including 39 Pseudomonas aeruginosa isolates from LV Prasad Eye Institute, Hyderabad, India. Genome sequencing was performed by Microbes NG (LVP3-6), Dr Luke Green, University of Sheffield (LVP3-6) and Dr Naveen Kumar, Christian Medical College, Vellore (all other isolates).

FASTA files were analysed using the Comprehensive Antibiotic Resistance Database Resistance Gene Identifier (CARD-RGI). This file contains details of perfect and strict hits for antibiotic resistance genes, as identified by CARD-RGI.

See README file for more details.


Funding

Adhesion to host cell membrane microdomains in cornea as an antimicrobial target to prevent corneal ulceration

Medical Research Council

Find out more...

History

Ethics

  • There is no personal data or any that requires ethical approval

Policy

  • The data complies with the institution and funders' policies on access and sharing

Sharing and access restrictions

  • The uploaded data can be shared openly

Data description

  • The file formats are open or commonly used

Methodology, headings and units

  • Headings and units are explained in the files

Usage metrics

    Department of Infection, Immunity & Cardiovascular Disease

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC