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1_Creating_Community_Matrices.R (10.13 kB)
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2_Compiling_Functional_Trait_Matrices.R (17.85 kB)
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3_Phylogenetic_diversity.R (8.75 kB)
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4_Evolutionary_Distinctiveness_and_EDGE.R (18.85 kB)
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5_Calculating_Ses_PD.R (9.55 kB)
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6_Calculating_Functional_Diversity.R (10.67 kB)
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7_Calculating_Ses_FD.R (16.63 kB)
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8_Fitting_Functional_Trait_Models.R (3.99 kB)
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9_Comparing_between_biogeographic_realms.R (11.92 kB)
DATASET
Hughes_et_al_diversity_of_trade_data.csv (1.72 MB)
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README.txt (5.58 kB)
DATASET
Hughes_et_al_trade_data.csv (1.39 MB)
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Global hotspots of traded phylogenetic and functional diversity
Version 2 2023-09-11, 18:21
Version 1 2023-07-26, 15:00
software
posted on 2023-09-11, 18:21 authored by David Edwards, Mike MassamMike Massam, Oscar Morton, Liam HughesLiam HughesCode to fully reproduce the results for the paper entitled "Global hotspots of traded phylogenetic and functional diversity", published in Nature, 2023, DOI: 10.1038/s41586-023-06371-3
Trade data used for the analysis is provided, other data sources are publicly available with links on how to access them both within the scripts and in the manuscript's methods.
Output data from the main analysis is also provided.
See the detailed readme file for further details on specific scripts.
Updated September 2023 to correct an issue with the data upload missing rows.
History
Ethics
- There is no personal data or any that requires ethical approval
Policy
- The data complies with the institution and funders' policies on access and sharing
Sharing and access restrictions
- An appropriate embargo period has been set
Data description
- The file formats are open or commonly used
Methodology, headings and units
- There is a file including methodology, headings and units, such as a readme.txt
