Stalefish

software

posted on 2022-09-23, 13:34 authored by Sebastian James, Stuart P. Wilson, Mackenzie Englund

<p>Stalefish is a software tool for the analysis of 2D brain slice images, allowing the neurobiologist to reconstruct three dimensional gene expression surfaces from ISH (or other histological) slices. The 3D surfaces can then be digitally unwrapped to make 2D expression maps.</p> <p><br></p> <p>Stalefish stands for: Spatial Analysis of ISH Brain Slice Data</p> <p><br></p>

Funding

James S. McDonnell Foundation, grant 220020516

History

Related Materials

1.
URL - References https://github.com/ABRG-Models/Stalefish
2.
DOI - Is supplement to Comparing the development of cortex-wide gene expression patterns between two rodent species in a common reference frame

Ethics

There is no personal data or any that requires ethical approval

Policy

The data complies with the institution and funders' policies on access and sharing

Sharing and access restrictions

The data can be shared openly

Data description

The file formats are open or commonly used

Methodology, headings and units

Headings and units are explained in the files

Usage metrics

School of Psychology

Categories

Statistical and quantitative genetics

Keywords

histology histology measurements brain slice preparations

Licence

Exports