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morphologica

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posted on 2022-09-28, 14:25 authored by Sebastian James, Stuart WilsonStuart Wilson

A library of supporting code for numerical modelling (JSON config, HDF5 data, Modern OpenGL visualization)


This header-only C++ code provides simulation support facilities for simulations of dynamical systems, agent-based models or, in fact, any program that needs dynamic, runtime visualization.


It helps with:


  • Visualizing your model while it runs. A modern OpenGL visualization scheme called morph::Visual provides the ability to visualise 2D and 3D graphs of surfaces, lines, bars, scatter plots and quiver plots with minimal processing overhead. Here's a morph::Visual helloworld and a more complete example. It's almost as easy to draw a graph in C++ with morphologica as it is to do so in Python.
     
  • Configuration: morphologica allows you to easily set up a simulation parameter configuration system, using the JSON reading and writing abilities of morph::Config. (morph::Config Example)
     
  • Saving data from your simulation. morphologica provides a set of easy-to-use convenience wrappers (morph::HdfData) around the HDF5 C API. By saving data in a standard format, it is easy to access simulation data in python, MATLAB or Octave for analysis and graphing. (HdfData Example)
     

Funding

James S. McDonnell Foundation, grant 220020516

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Ethics

  • There is no personal data or any that requires ethical approval

Policy

  • The data complies with the institution and funders' policies on access and sharing

Sharing and access restrictions

  • The data can be shared openly

Data description

  • The file formats are open or commonly used

Methodology, headings and units

  • There is a file including methodology, headings and units, such as a readme.txt

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