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pgfinder - Peptidoglycan analysis
software
posted on 2022-06-29, 08:54 authored by Neil ShephardNeil Shephard, Stephane MesnageStephane Mesnage, Ankur Patel, Robert Turnerpgfinder is a Python package that automates the analysis pipeline of data from Liquid Chromatography Mass Spectrometry comparing deconvoluted masses to a database of theoretical monoisotopic masses. These candidate monomers form the basis of theoretical dimer and trimer masses which are in turn matched against possible candidates after determining possible modifications.
Documentation : https://mesnage-org.github.io/pgfinder/
GitHub : https://github.com/Mesnage-Org/pgfinder
Funding
White Rose Doctoral Training Partnership in Mechanistic Biology and its Strategic Application
Biotechnology and Biological Sciences Research Council
Find out more...Analysis of the L,D transpeptidation pathway in Clostridium difficile: contribution to peptidoglycan synthesis and antibiotic resistance
Medical Research Council
Find out more...History
Ethics
- There is no personal data or any that requires ethical approval
Policy
- The data complies with the institution and funders' policies on access and sharing
Sharing and access restrictions
- The data can be shared openly
Data description
- The file formats are open or commonly used
Methodology, headings and units
- Headings and units are explained in the files
- There is a file including methodology, headings and units, such as a readme.txt
